PUBLICATIONS

1. Ananna NT, Shishir TA, Ahmed A, Sium SMA, Shakil MS, Haque FKM, et al. Characterization of two lytic bacteriophages infecting carbapenem-resistant clinical Klebsiella pneumoniae in Dhaka, Bangladesh. Virus Research. 2024 Nov 9;350:199491. Available from: https://doi.org/10.1016/j.virusres.2024.199491

2. Azam MdNK, Biswas P, Khandker A, Tareq MdMI, Tauhida SJ, Shishir TA, et al. Profiling of antioxidant properties and identification of potential analgesic inhibitory activities of Allophylus villosus and Mycetia sinensis employing in vivo, in vitro, and computational techniques. Journal of Ethnopharmacology. 2024 Aug 1;118695. 

Available from: https://doi.org/10.1016/j.jep.2024.118695

3. Saha O, Siddiquee NH, Akter R, Sarker N, Bristi UP, Sultana KF, et al. Antiviral Activity, Pharmacoinformatics, Molecular Docking, and Dynamics Studies of Azadirachta indica Against Nipah Virus by Targeting Envelope Glycoprotein: Emerging Strategies for Developing Antiviral Treatment. Bioinformatics and Biology Insights. 2024 Jan 1;18. 

Available from: https://doi.org/10.1177/11779322241264145

4. Saha O, Razzak A, Sarker N, Rahman N, Zahid AB, Sultana A, et al. In silico design and evaluation of multi-epitope dengue virus vaccines: a promising approach to combat global dengue burden. Discover Applied Sciences. 2024 Apr 10;6(4). 

Available from: https://doi.org/10.1007/s42452-024-05782-9

5. Shishir TA, Saha O, Sultana R, Mondol SM, Masum MdHU, Rahaman MdM, et al. Genome-wide study of globally distributed respiratory syncytial virus (RSV) strains implicates diversification utilizing phylodynamics and mutational analysis. Scientific Reports. 2023 Aug 19;13(1). 

Available from: https://doi.org/10.1038/s41598-023-40760-y

6. Masum MdHU, Rajia S, Bristi UP, Akter MS, Amin MR, Shishir TA, et al. In silico functional characterization of a hypothetical protein from Pasteurella multocida reveals a novel s-adenosylmethionine-dependent methyltransferase activity. Bioinformatics and Biology Insights. 2023 Jan 1;17. 

Available from: https://doi.org/10.1177/11779322231184024

7. Kenneth MJ, Shishir TA, Haque F. In silico analysis reveals mir-98-5p as a potential inhibitor of tumor cell proliferation and metastasis in colorectal cancer by targeting the fzd3 receptor of the Wnt signaling pathway. Journal of Genetic Engineering and Biotechnology. 2023 Jul 19;21(1). 

Available from: https://doi.org/10.1186/s43141-023-00532-7

8. Shishir TA, Jannat T, Naser IB. Genomic surveillance unfolds the SARS-CoV-2 transmission and divergence dynamics in Bangladesh. Frontiers in Genetics. 2022 Sep 26;13. 

Available from: https://doi.org/10.3389/fgene.2022.966939

9. Naser IB, Shishir TA, Faruque SN, Hoque MM, Hasan A, et al. (2021) Environmental prevalence of toxigenic Vibrio cholerae O1 in Bangladesh coincides with V. cholerae non-O1 non-O139 genetic variants which overproduce autoinducer-2. PLOS ONE 16(7): e0254068. 

Available from: https://doi.org/10.1371/journal.pone.0254068

10. Shishir TA, Jannat T, Naser IB. An in-silico study of the mutation-associated effects on the spike protein of SARS-CoV-2, Omicron variant. PLOS ONE. 2022 Apr 21;17(4): e0266844. 

Available from: https://doi.org/10.1371/journal.pone.0266844

11. Shishir TA, Naser IB, Faruque SM (2021) In silico comparative genomics of SARS-CoV-2 to determine the source and diversity of the pathogen in Bangladesh. PLOS ONE 16(1): e0245584. 

Available from: https://doi.org/10.1371/journal.pone.0245584

12. Khan RI, Nirzhor SSR, Chowdhury AM, Shishir TA, and Khan AI (2017) A fuzzy logic-based approach for adjusting insulin dosage for type 1 diabetes patients.  Journal of Innovations in Pharmaceutical and Biological Sciences.; 4(4): 145-152.

Available from: https://jipbs.com/index.php/journal/article/view/271/241

1. Shishir TA; Mahbub N; Kamal NE. Review on bioremediation: A tool to resurrect the polluted rivers. Pollution 2019, 5, 555–568

Available from:  https://doi.org/10.22059/poll.2019.272339.558 

2. Shishir, TA; Khan, RI; Nirzhor, SSR. The critical role of tumor microenvironment in cancer evolution and metastasis. Int. J. Biomed. Res. 2018, 9, 244–258

Available from: https://ssjournals.co.in/index.php/ijbr/article/view/4809/3311

1.  Chapter-21 –  Value-added products from industrial wastes of phytopharmaceutical industries,

Md Nur Kabidul Azam, Tushar Ahmed Shishir, Amia Khandker, Md Nazmul Hasan,

Editor(s): Hrudayanath Thatoi, Sonali Mohapatra, Swagat Kumar Das,

Innovations in Fermentation and Phytopharmaceutical Technologies,

Elsevier, 2022, Pages 457-489, ISBN 9780128218778

Available from: https://doi.org/10.1016/B978-0-12-821877-8.00002-6

1. Roy P, Naser IB, Shishir TA. Genomic Analysis of Phage Morons in Staphylococcus aureus in Relation to CRISPR-Cas Self-Targeting Spacers. 

Selected at the CRISPR 2025 Conference; February 16–20, 2025; Ōtautahi Christchurch, New Zealand.

2. Fatima T, Shishir TA, Naser IB. In Silico Dissection of the Infection Mechanisms of Bacteriophages in Vibrio cholerae. 

Poster presented at the 38th BSM Annual International Conference 2024; December 28– 29, 2024; Dhaka, Bangladesh.

3. Kabir A, Ahnaf A, Choudhury A, Shishir TA. A Genomic Analysis for Insights on the Interrelationship Between Virulence Genes and CRISPR Self-Targeting Spacers in Vibrio cholerae. 

Poster presented at the 38th BSM Annual International Conference 2024; December 28–29, 2024; Dhaka, Bangladesh.

4. Akter F, Bushra AE, Islam F, Ratri TR, Nabila N, Mithil FA, Hasan H, Keya RA, Trisha JF, Shishir TA, Naser IB. Impact of Horizontal Gene Transfer on Bacteriophage Efficacy: Insights from Vibrio Cholerae Ol Transformations. 

Poster presented at the 38th BSM Annual International Conference 2024; December 28–29, 2024; Dhaka, Bangladesh.

5. Roy P, Shishir TA, Naser IB. Genomic Analysis of the Correlation Between CRISPR Self-Targeting Spacers and Prophage-Related Pathogenicity in Staphylococcus aureus. 

Poster presented at the 23rd SCA General Assembly and Conference; November 30–December 2, 2024.

6. Akter F, Maliha ST, Shishir TA, Naser IB. Comparative Study on Antibiotic Resistance Profiles and Plasmid Presence in Water Samples Focusing Inside Dhaka District and Outside Dhaka District. 

Presented at the 37th BSM Annual Conference 2023; January 26 – 27, 2024; Dhaka, Bangladesh.

7. Nuha NT, Shishir TA. In silico study reveals the role of hsa-miR-19a-3p and hsa-miR-19b-3p in inhibiting proliferation and metastasis in breast cancer by targeting EGF protein. 

Presented at 5th ICBHA 2023 Conference; September 01– 03, 2023; Dhaka, Bangladesh.

8. Chakraborty D, Shishir TA, Naser IB. Spatiotemporal patterns of antimicrobial resistance in bacteria over the past two decades. 

Presented at 5th ICBHA 2023 Conference; September 1– 3, 2023; Dhaka, Bangladesh.

9. Akter F, Maliha ST, Zarin NK, Shishir TA, Naser IB. Prevalence of bacterial Antibiotic Resistance in Water Samples: A Pilot Study Reveals Contrasting Trends Inside and Outside Dhaka City, Bangladesh. 

Presented at 5th ICBHA 2023 Conference; September 01– 03, 2023; Dhaka, Bangladesh.